Amit Kawalia

Experience in processing and analyzing Next Generation Sequencing (NGS) data and in developing sequence analysis pipelines on HPC clusters . In depth familiarity with software packages used in the NGS data analysis: FastQC, BWA, IGV, SAMtools, BedTools, GATK, Picard etc. Experience with manipulating, and integrating data from public biological data repositories (e.g. UCSC Genome Browser, NCBI, Ensembl, etc.). Ability to write Perl, Bash and R scripts for bioinformatics and statistics analyses.